consensus
 alpha1.1
 alpha1.2
 alpha2
 alpha3
 alpha4
 alpha5
 beta1.1
 beta1.2
 beta2
 beta3
 beta4
 beta5
 turn1.1
 turn1.2
 turn2
 turn4
 1b-turn
 2b-turn
 3b-turn
 4b-turn
 coil1
 coil2
 inout
 inside1.1
 inside1.2
 outside1
 hphobil
 All 
 hphobic 
 small
 positive
 charged
 polar-Y
 tiny
 aliphatic
 aromatic
 negative
 charged-H
 hl-pos
 hphilic
 char or hl
 char/hl/P
 pl-ar/ch/P
 pl/P
 pl-ar/ch
 pl-ar-p/P
 pl-ar-p
 small+pl/P
 sm+pl
 sm+hl
 ti/sm+pl
 ti/sm+pl/P
 ti/n+hl/T
 ti/n+hl/T/P
 ti/pl-ar
 ti/pl-ar/p
 ti/pl
 sm-P/pl
 sm/pl
 sm-P/pl-ar
 sm/pl-ar
 sm-P/hl
 sm-P
 sm+hb/ti
 sm+hb
 sm-pl-P
 sm-pl
 sm-hl
 al/sm-hl
 al/sm-pl
 al/sm+hb-T
 al/lg-pl
 vhb
 vhb/P
 vhb/T
 vhb/T/P
 vhb/T/K
 vhb/sm-PC/K
 vhb/sm-C/K
 hb/sm
 hb/sm-P
 hb/P
 ar/vhb
 ar/al/M
 ar/M
 lg-n
 lg+pl
 lg-al
 lg 
 hbonddon
 hbondacc
 all-P
 nhb+nP
 n(hbd/hba)
 nch 
 all-KP
 P 
 G

 individual amino acids   
 a-helical residues

 
 
 
 
 b-strand residues

 
 
 
 
 turn residues

 
 
 b-turn residues

 
 
 random coil residues
 random coil residues
 buried / solvent exposed
 buried
 buried
 solvent exposed

 all 20 amino acids
 hydrophobic
 small side chain 
 positive charged
 charged 
 polar minus Y
 very small side chain
 aliphatic {L,I,V}
 aromatic {H,W,Y,F}
 negative charged
 charged minus H
 hydrophilic minus positive
 hydrophilic
 charged or hydrophilic
 charged or hydrophilic or P
 (polar minus aromatic) or charged or P
 polar or P
 (polar minus aromatic) or charged
 ((polar minus aromatic) minus positive) or P
 (polar minus aromatic) minus positive
 (small and polar) or P
 small and polar
 small and hydrophilic
 tiny or (small and polar)
 tiny or (small and polar) or P
 tiny or (negative and hydrophilic) or T
 tiny or (negative and hydrophilic) or T or P
 tiny or (polar minus aromatic)
 tiny or (polar minus aromatic) or P
 tiny or polar
 (small minus P) or polar
 small or polar
 (small minus P) or (polar minus aromatic)
 small or (polar minus aromatic)
 (small minus P) or hydrophilic
 small minus P
 (small and hydrophobic) or tiny
 small and hydrophobic
 (small minus polar) minus P
 small minus polar
 small minus hydrophilic
 aliphatic or (small minus hydrophilic)
 aliphatic or (small minus polar)
 (aliphatic or (small and hydrophobic) minus T)
 aliphatic or (large minus polar)
 very-hydrophobic
 very-hydrophobic or P
 very-hydrophobic or T
 very-hydrophobic or P or T
 very-hydrophobic or T or K
 very-hydrophobic or (small minus P_C) or K
 very-hydrophobic or (small minus C) or K
 hydrophobic or small
 hydrophobic or (small minus P)
 hydrophobic or P
 aromatic or very-hydrophobic
 aromatic or aliphatic or M
 aromatic or M
 large minus negative
 large and polar
 large minus aliphatic
 large
 hydrogen-bond-donors
 hydrogen-bond-accepters
 all minus P
 (not hydrophobic) and (not P) 
 not (hydrogen-bond-donors or accepters)
 not charged
 all minus K_P
 proline
 glycine